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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11724772_11726121_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11724772 - 11726121
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTCGGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CCTTCCCCAACC
Flanking Amino Acid:
EMSFFDENRTGDVISRLTSD
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
34.5
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
72.7
0.51
0.9
65.3
36.3
Minor 5ss
34.6
-1.7
3.1
44.1
43.8
Minor BPS
54.5
0.12
2
67.47
44.1

Associated Gene:

Gene:
ABCB9
Ensembl Gene ID:
ENSAPLG00000002402
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002409
11723264 - 11735459
12196