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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11728667_11729497_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11728667 - 11729497
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GAGGGTTTCATC
Flanking Amino Acid:
YEFVLGDCMESVGSVYSGLM
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.7
0.8
0.7
77.3
31.5
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
40.1
-0.8
2
43.05
39.1

Associated Gene:

Gene:
ABCB9
Ensembl Gene ID:
ENSAPLG00000002402
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002409
11723264 - 11735459
12196