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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11729687_11730282_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11729687 - 11730282
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
ATCCGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
AGCACCTGACCA
Flanking Amino Acid:
RTRSATQVLQNVSFTLHPGK
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
72.1
0.5
1
64.9
40.6
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
47.9
-0.1
1.8
56.41
42.2

Associated Gene:

Gene:
ABCB9
Ensembl Gene ID:
ENSAPLG00000002402
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002409
11723264 - 11735459
12196