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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11730457_11731804_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11730457 - 11731804
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGAGCG
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
AGCTCCTTACTG
Flanking Amino Acid:
MYDHKYLHSVISLVSQEPVL
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
56.3
41.2
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
29.8
-2.3
3.4
36
42.9
Minor BPS
57
0.08
1.7
58.15
43.9

Associated Gene:

Gene:
ABCB9
Ensembl Gene ID:
ENSAPLG00000002402
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002409
11723264 - 11735459
12196