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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11731965_11732314_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11731965 - 11732314
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGACA
5'SS Class:
major
3'SS Sequence:
CTTGATCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTCTCTTGATC
Flanking Amino Acid:
ITELQDGYHTEAGEKGAQLS
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
65.3
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.7
0.42
1
62.6
38.3
Minor 5ss
31.5
-2.1
3.2
41.3
44.7
Minor BPS
66.2
0.49
1.2
70.29
35.5

Associated Gene:

Gene:
ABCB9
Ensembl Gene ID:
ENSAPLG00000002402
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002409
11723264 - 11735459
12196