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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11750025_11750650_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11750025 - 11750650
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCT|GCAAGTTCT
5'SS Class:
major
3'SS Sequence:
CTTCGGTTAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATACTTTATA
Flanking Amino Acid:
KANLTQKYQELHLQTAVTYS
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.5
71.1
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
59.2
0.21
1.1
59.6
39.7
Minor 5ss
35.4
-1.7
4
60.6
43.7
Minor BPS
54.2
0.13
1.8
66.12
40.2

Associated Gene:

Gene:
VPS37B
Ensembl Gene ID:
ENSAPLG00000023690
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040718
11749588 - 11755329
5742