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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11750069_11750697_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11750069 - 11750697
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACGTTT
5'SS Class:
major
3'SS Sequence:
CATGCCGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCACTTACTC
Flanking Amino Acid:
EAYQIKKTKLDRQSSNASLE
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
79.5
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
69.4
0.44
1
60.8
40
Minor 5ss
48.2
-0.2
3.2
73.2
43.7
Minor BPS
52.7
0.06
1.8
65.77
39.6

Associated Gene:

Gene:
VPS37B
Ensembl Gene ID:
ENSAPLG00000023690
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031030
11747984 - 11752423
4440