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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11761720_11762529_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11761720 - 11762529
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGACCAT
U12 Branch Point Sequence:
GGACCCGCGACC
Flanking Amino Acid:
STAQLVAASKVKAEKSSRNL
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
45.3
-0.3
1.4
50.2
43.7
Major PPT
75.9
0.58
1
69.4
41.7
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
42.5
-0.6
2.1
50.34
39.7

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236