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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11763129_11763645_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11763129 - 11763645
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTAACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ATTCTTGTAACA
Flanking Amino Acid:
LQKEIVESGRGAATTQEFYA
Intron Amino Acid Position:
843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
66.2
0.36
1
60.1
39.5
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
54.4
0.14
2
70.42
35.8

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236