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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11764213_11764332_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11764213 - 11764332
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CATTTCCCAACA
Flanking Amino Acid:
AIEDAVRRIEEMMSRARTES
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
72.2
0.5
0.9
66.8
33.9
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
50.5
0.01
1.9
65.32
40.8

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236