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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11764444_11765066_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11764444 - 11765066
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACAAT
5'SS Class:
major
3'SS Sequence:
CCTCCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CTGCTGAAAACC
Flanking Amino Acid:
ALRGVLGLAQELRPKSLDIK
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
71.2
40.6
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
72.3
0.5
0.9
68.4
31.8
Minor 5ss
39
-1.2
3.3
56.4
48
Minor BPS
37.8
-0.9
2.3
47.56
42.2

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236