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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11765446_11765721_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11765446 - 11765721
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGGG
5'SS Class:
major
3'SS Sequence:
CTCCTGCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGTCCCTGACCC
Flanking Amino Acid:
GHAQYVASMADAAALVGALS
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
58.2
46.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
68.8
0.42
1
64.5
36.5
Minor 5ss
36.6
-1.5
3.4
49.7
46.5
Minor BPS
56.8
0.19
1.8
70.01
40.7

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236