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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11765809_11766016_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11765809 - 11766016
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCCT
5'SS Class:
strong_major
3'SS Sequence:
GAATTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CATTCTGTGATC
Flanking Amino Acid:
PLHVRCTSSPDYLLSRAEAA
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68
42.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
73.9
0.54
1
66.5
40.1
Minor 5ss
46.6
-0.3
2.8
66.1
45
Minor BPS
49.2
-0
2
61.47
39

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236