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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11766165_11766360_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11766165 - 11766360
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TCCCACCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
GTGCCCACACCT
Flanking Amino Acid:
CELQGKLLEKSNQEQSLQQK
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
50
0
1.2
61.8
35.9
Major PPT
68.3
0.41
0.8
60.8
29
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
44.5
-0.3
2
63.86
45.6

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236