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Intron Name: Anas_platyrhynchos_platyrhynchos_16_11766556_11766723_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11766556 - 11766723

Intron Length:

168

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCGGG

5'SS Class:

major

3'SS Sequence:

GCCCTCCTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATGAC

U12 Branch Point Sequence:

CCCTCCTGACAG

Flanking Amino Acid:

AQSSLSHAKQAGTELSAQLE

Intron Amino Acid Position:

539

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.2

0.31

1.3

49.1

47.6

Major BPS

59.6

0.24

1.2

51.4

43.9

Major PPT

65.7

0.35

60.2

35.5

Minor 5ss

40.2

-1.1

3.5

48.2

Minor BPS

44.6

-0.5

1.9

44.82

47.1

Associated Gene:

Gene:

HIP1R

Ensembl Gene ID:

ENSAPLG00000002663

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002800

11760791 - 11776026

15236