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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11767322_11767588_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11767322 - 11767588
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCCA
5'SS Class:
major
3'SS Sequence:
TGTCCCCGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CCTCTCTGAAAG
Flanking Amino Acid:
INTHAELLRKNADTAKQLTV
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
63.2
42.9
Major BPS
69.8
0.49
1
61
37.5
Major PPT
67.5
0.39
0.9
61
35.2
Minor 5ss
36.6
-1.5
3.3
48.7
47
Minor BPS
48
-0.2
1.7
50.47
43.4

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236