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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11767952_11768258_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11767952 - 11768258
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGACCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
CACCGTTTGACC
Flanking Amino Acid:
RAEMEKIKLEAQRYITQLKA
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
73.4
0.53
0.9
66.6
35.2
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
46.8
-0.2
1.8
51.31
40.3

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236