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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11768391_11768464_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11768391 - 11768464
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCA
5'SS Class:
major
3'SS Sequence:
CTGTCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAG
U12 Branch Point Sequence:
TCAGCCTGACGC
Flanking Amino Acid:
ISTASTTEPQVTSDLFQQTF
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
62.8
37.7
Major BPS
48.2
-0.1
1.6
57.3
41.7
Major PPT
74
0.54
0.8
65.6
36.1
Minor 5ss
22.7
-3.1
3.4
29.2
43.6
Minor BPS
43.5
-0.5
2
51.45
45.5

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236