About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11768603_11768793_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11768603 - 11768793
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
CTTGTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
GTCACCATGACT
Flanking Amino Acid:
RLIQIPRLPENPPNFLRASA
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61.5
45.6
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
75.7
0.58
0.8
69
31.6
Minor 5ss
35.1
-1.7
3.4
46.9
48.5
Minor BPS
57.5
0.32
1.7
74.19
42.2

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236