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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11769015_11769208_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11769015 - 11769208
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CCCATTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTGCAGTCACT
Flanking Amino Acid:
AVKLMFKLHSCLPADTLKGH
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
59.2
39.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
66.5
0.37
0.9
59.6
35.5
Minor 5ss
33
-1.9
3
47
41.2
Minor BPS
45.7
-0.2
2.6
76.66
45.8

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236