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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11769350_11770382_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11769350 - 11770382
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
GGCGCCTCACCG
Flanking Amino Acid:
LDCELKLSESVFRQLNTSMA
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
78.8
0.65
0.7
69.6
31.2
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
44.1
-0.5
2
44.89
46.8

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236