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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11770445_11770782_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11770445 - 11770782
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGATAT
U12 Branch Point Sequence:
TGCACAGTGACC
Flanking Amino Acid:
EKTAGTDVNNIFQLTVELFD
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.8
30.2
Major BPS
47.1
-0.1
1.2
40.7
39.7
Major PPT
85.6
0.8
0.9
84.2
30.7
Minor 5ss
34.2
-1.8
3.4
48
41.4
Minor BPS
44
-0.4
2.3
56.54
41.9

Associated Gene:

Gene:
HIP1R
Ensembl Gene ID:
ENSAPLG00000002663
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002800
11760791 - 11776026
15236