Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11770860_11770993_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11770860 - 11770993

Intron Length:

134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGACCC

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTTACAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

TTTCCTTTTACA

Flanking Amino Acid:

LLTKISFHAKHHEFPPGLEV

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

68.6

36.5

Major BPS

74.2

0.6

39.4

Major PPT

67.8

0.4

70.2

33.2

Minor 5ss

27.8

-2.5

2.9

34.2

41.4

Minor BPS

69.9

0.62

1.6

80.97

Associated Gene:

Gene:

HIP1R

Ensembl Gene ID:

ENSAPLG00000002663

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002800

11760791 - 11776026

15236