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Intron Name: Anas_platyrhynchos_platyrhynchos_16_11771789_11772139_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

11771789 - 11772139

Intron Length:

351

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

GACTGCTGGGAAG|G

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

CCTTGAC

U12 Branch Point Sequence:

TTGGCCTTGACT

Flanking Amino Acid:

EAPVKEKHVRRIILGTHHEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

-0.1

1.4

53.6

45.9

Major BPS

61.6

0.29

1.1

54.6

40.8

Major PPT

47.5

-0.1

1.2

44.5

41.3

Minor 5ss

96.3

1.56

0.7

94.6

16.8

Minor BPS

76.5

0.92

1.3

87.04

39.2

Associated Gene:

Gene:

HIP1R

Ensembl Gene ID:

ENSAPLG00000002663

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002800

11760791 - 11776026

15236