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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11782868_11783033_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11782868 - 11783033
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCAGTACT
5'SS Class:
major
3'SS Sequence:
CTGTCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GATTTCATAACT
Flanking Amino Acid:
NRCCNPTVNKDACYPTSKLQ
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
78.2
36.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.6
0.64
0.8
69.8
36.6
Minor 5ss
35.5
-1.6
2.7
45.1
35.9
Minor BPS
68.5
0.66
1.6
83.02
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003594
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003679
11782715 - 11790871
8157