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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11788401_11789414_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11788401 - 11789414
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACCC
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CTATCTTTAAGC
Flanking Amino Acid:
TDTELSSLRQIYVKQQRDLQ
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
65.2
39.1
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
73.8
0.54
1
71
38.4
Minor 5ss
39.3
-1.2
3
51.9
44.8
Minor BPS
65.4
0.46
1.6
70.6
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003594
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003679
11782715 - 11790871
8157