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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11789504_11790359_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11789504 - 11790359
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAAAC
Flanking Amino Acid:
VVLKNELALNVEKAKRKDQL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
70.1
0.45
1.1
66.4
43.3
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
53.4
0.08
1.5
62.35
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003594
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003679
11782715 - 11790871
8157