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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11790462_11790546_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11790462 - 11790546
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTAAAG
Flanking Amino Acid:
ELILETDKLKDDLCEKMKEN
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81
0.7
1
82.2
33.3
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
62.1
0.24
1.6
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003594
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003679
11782715 - 11790871
8157