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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11794291_11795006_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11794291 - 11795006
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
ATATACTTAACC
Flanking Amino Acid:
IDVIQEKWPEVDDDSIEDLG
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
86.4
0.82
0.6
82.4
22.2
Minor 5ss
33.8
-1.8
2.9
43.3
43.9
Minor BPS
74.6
0.75
1.4
79.3
35

Associated Gene:

Gene:
DENR
Ensembl Gene ID:
ENSAPLG00000003750
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003848
11794246 - 11799658
5413