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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11795147_11795781_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11795147 - 11795781
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTTCCCTTAAAC
Flanking Amino Acid:
VTRVCGLATFEIDLKEAQRF
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
72.7
0.51
0.9
69.5
34.5
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
79.9
0.92
1.3
85.76
31.3

Associated Gene:

Gene:
DENR
Ensembl Gene ID:
ENSAPLG00000003750
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003848
11794246 - 11799658
5413