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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11795899_11797543_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11795899 - 11797543
Intron Length:
1645

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGTCATTTAACT
Flanking Amino Acid:
EEEEKKKQKRGGRGQIKQKK
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
81.1
33
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
76.9
0.6
1
77.8
34.4
Minor 5ss
29
-2.4
4.2
47.6
48
Minor BPS
69.3
0.69
1.5
83.56
36.7

Associated Gene:

Gene:
DENR
Ensembl Gene ID:
ENSAPLG00000003750
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003848
11794246 - 11799658
5413