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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11797628_11797687_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11797628 - 11797687
Intron Length:
60

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
TGATGTACGTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTTCTCACCA
Flanking Amino Acid:
ALLPVSVRACENSPKQEAGV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
60.5
40.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
50.1
0
1.2
54.2
44.8
Minor 5ss
43.4
-0.7
2.9
53.5
45.4
Minor BPS
56.5
0.2
1.8
70.77
41.8

Associated Gene:

Gene:
DENR
Ensembl Gene ID:
ENSAPLG00000003750
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003848
11794246 - 11799658
5413