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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11801050_11801807_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11801050 - 11801807
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAAT
5'SS Class:
major
3'SS Sequence:
AAATGTGTCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCATATTAATA
Flanking Amino Acid:
EDDYILFDCPGQIELYTHLP
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.4
34.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
58.9
0.2
1
55
44.7
Minor 5ss
35
-1.7
3.1
47.8
47.9
Minor BPS
52.8
0.08
1.6
61.55
38.6

Associated Gene:

Gene:
GPN3
Ensembl Gene ID:
ENSAPLG00000003776
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003867
11800655 - 11803526
2872