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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11801933_11802627_F

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
11801933 - 11802627
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCATT
5'SS Class:
weak_minor
3'SS Sequence:
TATATTTCCTCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGTATTTAACC
Flanking Amino Acid:
DSQFMVESFKFISGILAALS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
74.4
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.7
0.67
0.8
77.6
36.3
Minor 5ss
74.3
0.82
1.9
83.7
34.7
Minor BPS
67
0.51
1.5
72.04
39

Associated Gene:

Gene:
GPN3
Ensembl Gene ID:
ENSAPLG00000003776
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003867
11800655 - 11803526
2872