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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11806818_11807594_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11806818 - 11807594
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
CACCGTTTAACT
Flanking Amino Acid:
SQFKGPAPRETKDVDIIDEA
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
52.4
0.15
1.8
65.93
44.9

Associated Gene:

Gene:
ARPC3
Ensembl Gene ID:
ENSAPLG00000004006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004113
11806736 - 11809955
3220