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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11807672_11807953_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11807672 - 11807953
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GTGCTCTTATTT
Flanking Amino Acid:
NVFFKNYEIKNEADRTLIYI
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
89
0.88
0.7
84.2
30.3
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
55.6
0.25
1.6
69.58
41.7

Associated Gene:

Gene:
ARPC3
Ensembl Gene ID:
ENSAPLG00000004006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004113
11806736 - 11809955
3220