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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11808023_11808268_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11808023 - 11808268
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATCAATT
Flanking Amino Acid:
ISECLKKLQKCNSKGQGEKE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.2
0.64
0.9
69.2
41.8
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
57.3
0.31
2
82.92
37.9

Associated Gene:

Gene:
ARPC3
Ensembl Gene ID:
ENSAPLG00000004006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004113
11806736 - 11809955
3220