About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11808396_11808961_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11808396 - 11808961
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTGGTGTTATTT
Flanking Amino Acid:
YAKPTNKQEEEVMRAYLQQL
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
80.2
0.68
1
76.9
42.1
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
45.5
-0.2
2.3
66.34
45.4

Associated Gene:

Gene:
ARPC3
Ensembl Gene ID:
ENSAPLG00000004006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004113
11806736 - 11809955
3220