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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11809057_11809892_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11809057 - 11809892
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
FDPQSDKPSKWWICFVKRQF
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.1
0.88
0.6
84.6
23.2
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
ARPC3
Ensembl Gene ID:
ENSAPLG00000004006
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004113
11806736 - 11809955
3220