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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_118091_122086_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118091 - 122086
Intron Length:
3996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
AATTTTGCAATT
Flanking Amino Acid:
RFGSSEIYNIVHDKWKESGS
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
46.7
-0.1
2.1
66.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018136
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025783
113425 - 122208
8784