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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11812265_11812592_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11812265 - 11812592
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATGTGCTTTACT
Flanking Amino Acid:
GNAASTPQSQCLPSEIEVKY
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
58.2
0.34
2.1
78.24
43.9

Associated Gene:

Gene:
ANAPC7
Ensembl Gene ID:
ENSAPLG00000004360
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004513
11811652 - 11817315
5664