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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11812713_11814106_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11812713 - 11814106
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCT
5'SS Class:
major
3'SS Sequence:
GTGTTCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATACCT
Flanking Amino Acid:
GIPSRQRTPKINMMLANLYK
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.3
35
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.9
0.67
0.9
73
37.5
Minor 5ss
45.3
-0.5
2.4
60.2
44.2
Minor BPS
57.1
0.3
1.9
82.09
39.1

Associated Gene:

Gene:
ANAPC7
Ensembl Gene ID:
ENSAPLG00000004360
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004513
11811652 - 11817315
5664