About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11814219_11814455_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11814219 - 11814455
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTTCTGAATA
Flanking Amino Acid:
QCPLALDAILGLLSLSVKGA
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.8
0.49
0.9
69.8
35.4
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
69.5
0.61
1.4
75.52
36.2

Associated Gene:

Gene:
ANAPC7
Ensembl Gene ID:
ENSAPLG00000004360
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004513
11811652 - 11817315
5664