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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11814610_11814714_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11814610 - 11814714
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTCTCTTAAAG
Flanking Amino Acid:
GDNTRAINTICSLEKKSLLR
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
81.5
0.71
0.9
82.7
26.4
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
70.4
0.5
1.4
74.05
37.7

Associated Gene:

Gene:
ANAPC7
Ensembl Gene ID:
ENSAPLG00000004360
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004513
11811652 - 11817315
5664