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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11814858_11815216_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11814858 - 11815216
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TGACCTTCAAAT
Flanking Amino Acid:
AQMLDPYLIKGMDVYGYLLA
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83.5
0.75
0.9
81.3
36.4
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
52.6
0.16
1.6
69.29
40.8

Associated Gene:

Gene:
ANAPC7
Ensembl Gene ID:
ENSAPLG00000004360
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004513
11811652 - 11817315
5664