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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11815984_11816454_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11815984 - 11816454
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCATCA
Flanking Amino Acid:
LAPCRLDCYEGLIECYLASN
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.68
0.9
79.5
32.7
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
56.2
0.19
2.1
77.26
39.3

Associated Gene:

Gene:
ANAPC7
Ensembl Gene ID:
ENSAPLG00000004360
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004513
11811652 - 11817315
5664