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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11816680_11817072_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11816680 - 11817072
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TGCAAATAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTAAAA
Flanking Amino Acid:
KAVVKKAELLSREQKYEDGI
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.2
31.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
54.6
0.11
1.1
47.9
42.9
Minor 5ss
42.3
-0.8
2.7
52.3
39.5
Minor BPS
57.7
0.24
1.9
72.88
37.8

Associated Gene:

Gene:
ANAPC7
Ensembl Gene ID:
ENSAPLG00000004360
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004513
11811652 - 11817315
5664