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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11817224_11817281_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11817224 - 11817281
Intron Length:
58

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCAG
5'SS Class:
major
3'SS Sequence:
AATCAACTCCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GAATCCATAATC
Flanking Amino Acid:
EAMDQYSIALSKKLSIESLI
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
59.7
46.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
51.8
0.04
1.1
46.6
39.7
Minor 5ss
42.8
-0.8
3
55.8
48.4
Minor BPS
61.2
0.33
1.6
66.82
38.1

Associated Gene:

Gene:
ANAPC7
Ensembl Gene ID:
ENSAPLG00000004360
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004513
11811652 - 11817315
5664