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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_1183811_1236384_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1183811 - 1236384
Intron Length:
52574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
AATATACTAACC
Flanking Amino Acid:
DLVGVLPLAMEAEILNTAIL
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
75.8
0.58
0.8
73.8
36.9
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
47.4
-0.2
1.9
60.96
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012171
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024447
1144737 - 1372582
227846
ENSAPLT00000037047
1144737 - 1430941
286205
ENSAPLT00000022168
1144737 - 1395385
250649
ENSAPLT00000034307
1144737 - 1430941
286205
ENSAPLT00000012672
1144737 - 1397561
252825
ENSAPLT00000028392
1144737 - 1351737
207001
ENSAPLT00000048397
1144737 - 1434770
290034
ENSAPLT00000027628
1144737 - 1367322
222586
ENSAPLT00000040969
1144737 - 1367322
222586