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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11841177_11841344_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11841177 - 11841344
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTA
Flanking Amino Acid:
RTSMSKMFVKGAPEGVIDRC
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
60.4
0.23
1.2
60.3
40.7
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
67.5
0.55
1.5
78
33.3

Associated Gene:

Gene:
ATP2A2
Ensembl Gene ID:
ENSAPLG00000004659
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004899
11835343 - 11873951
38609